机器学习(ML)通常被视为一种黑盒回归技术,无法提供相当大的科学见解。 ML模型是通用函数近似器,如果正确使用,则可以提供与用于拟合的地面数据集有关的科学信息。 ML比参数模型的好处是,没有预定义的基础函数限制可以建模的现象。在这项工作中,我们在三个数据集上开发了ML模型:太空环境技术(SET)高精度卫星阻力模型(HASDM)密度数据库,这是Jacchia-Bowman 2008经验热层密度模型(JB2008),Jacchia-Bowman 2008经验的空间端段匹配数据集,以及具有挑战性的Minisatellite有效载荷(Champ)的加速度计衍生的密度数据集。将这些ML模型与海军研究实验室质谱仪和不相互分的散射雷达(NRLMSIS 2.0)模型进行比较,以研究中热层中传感后冷却的存在。我们发现NRLMSIS 2.0和JB2008-ML都不能说明后冷却,因此在强烈的地磁风暴(例如2003年万圣节风暴)之后的时期内表现不佳。相反,HASDM-ML和Champ-ML确实显示了传感后冷却的证据,表明这种现象存在于原始数据集中。结果表明,根据位置和暴风雨强度,速度1-3天的密度降低可能会发生1--3天。
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了解潮汐能流中鱼类的丰度和分布对于评估通过向栖息地引入潮汐能设备所带来的风险很重要。但是,适合潮汐能的潮汐电流流量通常是高度湍流的,这使回声器数据的解释变得复杂。必须从用于生物分析的数据中排除受夹带空气回报污染的水柱的部分。应用单个常规算法来识别夹带的空气的深度不足,对于不连续,深度动态,多孔的边界而言,随着潮流流速而变化。使用Fundy湾的潮汐能示威场所进行的案例研究,我们描述了具有基于U-NET的体系结构的深机学习模型的开发和应用。我们的模型Echofilter对湍流条件的动态范围高度响应,并且对边界位置的细微差别敏感,产生了夹带的空气边界线,在移动下降方面的平均误差为0.33亿,并且在移动下降范围内为0.5-1.5-1.0m关于固定的上调数据,不到现有算法解决方案的一半。该模型的整体注释与人类细分有很高的一致性,移动下降记录的联合会得分为99%,而固定的上方录音记录为92-95%。与手动编辑当前可用算法所需的线路位置所需的时间相比,手动编辑所需的时间减少了50%。由于最初的自动放置的改进,模型的实现允许提高线路位置的标准化和可重复性。
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Accurate determination of a small molecule candidate (ligand) binding pose in its target protein pocket is important for computer-aided drug discovery. Typical rigid-body docking methods ignore the pocket flexibility of protein, while the more accurate pose generation using molecular dynamics is hindered by slow protein dynamics. We develop a tiered tensor transform (3T) algorithm to rapidly generate diverse protein-ligand complex conformations for both pose and affinity estimation in drug screening, requiring neither machine learning training nor lengthy dynamics computation, while maintaining both coarse-grain-like coordinated protein dynamics and atomistic-level details of the complex pocket. The 3T conformation structures we generate are closer to experimental co-crystal structures than those generated by docking software, and more importantly achieve significantly higher accuracy in active ligand classification than traditional ensemble docking using hundreds of experimental protein conformations. 3T structure transformation is decoupled from the system physics, making future usage in other computational scientific domains possible.
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Variational autoencoders model high-dimensional data by positing low-dimensional latent variables that are mapped through a flexible distribution parametrized by a neural network. Unfortunately, variational autoencoders often suffer from posterior collapse: the posterior of the latent variables is equal to its prior, rendering the variational autoencoder useless as a means to produce meaningful representations. Existing approaches to posterior collapse often attribute it to the use of neural networks or optimization issues due to variational approximation. In this paper, we consider posterior collapse as a problem of latent variable non-identifiability. We prove that the posterior collapses if and only if the latent variables are non-identifiable in the generative model. This fact implies that posterior collapse is not a phenomenon specific to the use of flexible distributions or approximate inference. Rather, it can occur in classical probabilistic models even with exact inference, which we also demonstrate. Based on these results, we propose a class of latent-identifiable variational autoencoders, deep generative models which enforce identifiability without sacrificing flexibility. This model class resolves the problem of latent variable non-identifiability by leveraging bijective Brenier maps and parameterizing them with input convex neural networks, without special variational inference objectives or optimization tricks. Across synthetic and real datasets, latent-identifiable variational autoencoders outperform existing methods in mitigating posterior collapse and providing meaningful representations of the data.
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Differentiable Architecture Search (DARTS) has attracted considerable attention as a gradient-based Neural Architecture Search (NAS) method. Since the introduction of DARTS, there has been little work done on adapting the action space based on state-of-art architecture design principles for CNNs. In this work, we aim to address this gap by incrementally augmenting the DARTS search space with micro-design changes inspired by ConvNeXt and studying the trade-off between accuracy, evaluation layer count, and computational cost. To this end, we introduce the Pseudo-Inverted Bottleneck conv block intending to reduce the computational footprint of the inverted bottleneck block proposed in ConvNeXt. Our proposed architecture is much less sensitive to evaluation layer count and outperforms a DARTS network with similar size significantly, at layer counts as small as 2. Furthermore, with less layers, not only does it achieve higher accuracy with lower GMACs and parameter count, GradCAM comparisons show that our network is able to better detect distinctive features of target objects compared to DARTS.
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Deep learning techniques with neural networks have been used effectively in computational fluid dynamics (CFD) to obtain solutions to nonlinear differential equations. This paper presents a physics-informed neural network (PINN) approach to solve the Blasius function. This method eliminates the process of changing the non-linear differential equation to an initial value problem. Also, it tackles the convergence issue arising in the conventional series solution. It is seen that this method produces results that are at par with the numerical and conventional methods. The solution is extended to the negative axis to show that PINNs capture the singularity of the function at $\eta=-5.69$
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The Government of Kerala had increased the frequency of supply of free food kits owing to the pandemic, however, these items were static and not indicative of the personal preferences of the consumers. This paper conducts a comparative analysis of various clustering techniques on a scaled-down version of a real-world dataset obtained through a conjoint analysis-based survey. Clustering carried out by centroid-based methods such as k means is analyzed and the results are plotted along with SVD, and finally, a conclusion is reached as to which among the two is better. Once the clusters have been formulated, commodities are also decided upon for each cluster. Also, clustering is further enhanced by reassignment, based on a specific cluster loss threshold. Thus, the most efficacious clustering technique for designing a food kit tailored to the needs of individuals is finally obtained.
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Learning efficient and interpretable policies has been a challenging task in reinforcement learning (RL), particularly in the visual RL setting with complex scenes. While neural networks have achieved competitive performance, the resulting policies are often over-parameterized black boxes that are difficult to interpret and deploy efficiently. More recent symbolic RL frameworks have shown that high-level domain-specific programming logic can be designed to handle both policy learning and symbolic planning. However, these approaches rely on coded primitives with little feature learning, and when applied to high-dimensional visual scenes, they can suffer from scalability issues and perform poorly when images have complex object interactions. To address these challenges, we propose \textit{Differentiable Symbolic Expression Search} (DiffSES), a novel symbolic learning approach that discovers discrete symbolic policies using partially differentiable optimization. By using object-level abstractions instead of raw pixel-level inputs, DiffSES is able to leverage the simplicity and scalability advantages of symbolic expressions, while also incorporating the strengths of neural networks for feature learning and optimization. Our experiments demonstrate that DiffSES is able to generate symbolic policies that are simpler and more and scalable than state-of-the-art symbolic RL methods, with a reduced amount of symbolic prior knowledge.
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Tumor-stroma ratio (TSR) is a prognostic factor for many types of solid tumors. In this study, we propose a method for automated estimation of TSR from histopathological images of colorectal cancer. The method is based on convolutional neural networks which were trained to classify colorectal cancer tissue in hematoxylin-eosin stained samples into three classes: stroma, tumor and other. The models were trained using a data set that consists of 1343 whole slide images. Three different training setups were applied with a transfer learning approach using domain-specific data i.e. an external colorectal cancer histopathological data set. The three most accurate models were chosen as a classifier, TSR values were predicted and the results were compared to a visual TSR estimation made by a pathologist. The results suggest that classification accuracy does not improve when domain-specific data are used in the pre-training of the convolutional neural network models in the task at hand. Classification accuracy for stroma, tumor and other reached 96.1$\%$ on an independent test set. Among the three classes the best model gained the highest accuracy (99.3$\%$) for class tumor. When TSR was predicted with the best model, the correlation between the predicted values and values estimated by an experienced pathologist was 0.57. Further research is needed to study associations between computationally predicted TSR values and other clinicopathological factors of colorectal cancer and the overall survival of the patients.
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There has been much interest recently in developing fair clustering algorithms that seek to do justice to the representation of groups defined along sensitive attributes such as race and gender. We observe that clustering algorithms could generate clusters such that different groups are disadvantaged within different clusters. We develop a clustering algorithm, building upon the centroid clustering paradigm pioneered by classical algorithms such as $k$-means, where we focus on mitigating the unfairness experienced by the most-disadvantaged group within each cluster. Our method uses an iterative optimisation paradigm whereby an initial cluster assignment is modified by reassigning objects to clusters such that the worst-off sensitive group within each cluster is benefitted. We demonstrate the effectiveness of our method through extensive empirical evaluations over a novel evaluation metric on real-world datasets. Specifically, we show that our method is effective in enhancing cluster-level group representativity fairness significantly at low impact on cluster coherence.
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